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[Thu Jan 26 19:13:25 2012] [warn] RSA server certificate CommonName (CN) `www.domain.com' does NOT match server name!?
Check that you have not enabled the virtual host SSL instead of the just the virtual host because what is happening is with the virtual host SSL enabled its matching www.domain.com-ssl agains the common name www.domain.com.
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References
https://help.ubuntu.com/10.04/serverguide/C/httpd.html#https-configuration - trying this one first.
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